News

CHOmine (BETA-Version)

August 19, 2016

CHOmine, the InterMine site for CHO and Chinese hamster, went online on August 11, 2016 at https://chomine.boku.ac.at/. CHOmine collects and integrates publicly available Chinese hamster and CHO data, where different datasets are connected to provide user-friendly access. Currently, users are asked to test the site and to provide feedback (impressions, comments, issues, and suggestions for improvements) to Matthias.Gerstl@acib.at or Nicole.Borth@boku.ac.at.

CHO Epigenomic Data

April 14, 2016

A new database of epigenomic information (cho-epigenome.boku.ac.at) for 6 CHO cell lines has been created by Dr. Nicole Borth's group. A link to this database has been added to CHOgenome.org's Data webpage. The epigenomic database website hosts genome sequences for 6 cell lines, SNPs, structural variants, full genome methylation data, and batch culture histone modification data. The manuscript describing the acquisition and analysis of the data can be found here.

Gene Names with Prime Notation

June 24, 2015

Within the 2014 RefSeq annotations, 211 genes were recently identified as having not been loaded in the CHOgenome.org databases due to coding algorithm errors caused by prime notation (e.g. - 3' or 5') in the gene's name and product description. These errors have been rectified and the 211 genes, 115 genes in the 2014 CHO-K1 annotation and 96 genes in the 2014 CH annotation, have been correctly loaded to their respective CHOgenome.org databases. The complete list of these genes can be found on the Data tab in the CHO Community Files & Links section.

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Search RefSeq

Search the RefSeq CHO-K1 and Chinese hamster assemblies by gene name, symbol, or gene ID:

For detailed searches use Advanced Search

Welcome to the CHO Genome website! Tutorials for how to use this website can be viewed here and we welcome any questions or suggestions you may have.

Updates and details regarding the CHOStart project can be found here:

CHOStart

Access CHOmine, the CHO and Chinese hamster InterMine site:

CHOmine

 

Genes Blast Genome Viewer

Gene Search
Search the RefSeq Chinese Hamster and CHO-K1 assemblies

BLAST
BLAST sequences against Chinese Hamster or CHO-K1 genomes

Genome Viewer
View the annotated RefSeq Chinese Hamster or CHO-K1 genomes

Proteome Downloads Genome Viewer

Proteome Browser
Search the 2-D gel and shotgun datasets

Downloads
Useful Chinese Hamster publications and files

CH Genome Viewer
View the chromosome-sorted Chinese Hamster genome

Events

Previous Events

Mammalian Systems Biotechnology Workshop

Singapore

August 11 - August 12, 2016

This workshop will bring together globally eminent experts actively working in the Mammalian Systems Biotechnology field, in order to share and discuss state-of-the-art developments and their industrial applications.

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Cell Culture Engineering XV

La Quinta, California, USA

May 8 - May 13, 2016

The Cell Culture Engineering XV conference will bring together about 350 selected participants from top academic, industrial and governmental groups from all over the world.

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251st ACS National Meeting & Exposition

San Diego, CA, USA

March 13 - March 17, 2016

The 251st ACS National Meeting & Exposition in San Diego, CA will convene from March 13 - 17, 2016 and the BIOT division will focus on the exchange of information among academic and industrial researchers regarding technology utilizing life-based systems to produce useful products and services.

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