News

Updated CH assembly and CH/CHO-K1 annotations

May 1, 2019

We are excited to announce that the significantly improved Chinese hamster genome, CH PICR (GCF_00366804.1), along with its 2018 RefSeq annotation is now online. In addition, an updated RefSeq annotation for the CHO-K1 cell line is now available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the updated Chinese hamster genome can be found here.

New mRNA Expression Browser (Beta)

June 7, 2017

The browser (beta version) for the visualization of mRNA expression from CHO-K1 cells is now online. The data is from several published DNA-microarray or RNA-Seq experiments. The tutorial on how to use this browser can be found here.

Coming Soon!

March 10, 2017

Users will be able to visualize CHO cell mRNA expression data either from published DNA-microarray or RNA-Seq experiments via JBrowse. The visualized data will enable users to easily obtain gene expression levels and compare gene expression levels among different conditions.

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CHO-March 2012 Example Data

Spots Information

Spot No.
Symbol
Identification
NCBI Protein Accession
CHO Genome Database Link
CHO RefSeq Database Link
Glucosidase 2 subunit beta
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red dot
78 kDa glucose-regulated protein
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red dot
Heat shock cognate 71 kDa protein
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red dot
Clusterin
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red dot
Tubulin alpha-1A chain
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red dot
Tubulin beta-7 chain
blue dot
red dot
Calumenin
blue dot
red dot
Eukaryotic initiation factor 4A-I
blue dot
red dot
Actin, cytoplasmic 1
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red dot
Nuclear migration protein nudC
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red dot
Nascent polypeptide-associated complex subunit alpha, muscle-specific form
blue dot
red dot
Heme oxygenase 1
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red dot
Ferritin heavy chain
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red dot