News

New mRNA Expression Browser (Beta)

June 7, 2017

The browser (beta version) for the visualization of mRNA expression from CHO-K1 cells is now online. The data is from several published DNA-microarray or RNA-Seq experiments. The tutorial on how to use this browser can be found here.

Coming Soon!

March 10, 2017

Users will be able to visualize CHO cell mRNA expression data either from published DNA-microarray or RNA-Seq experiments via JBrowse. The visualized data will enable users to easily obtain gene expression levels and compare gene expression levels among different conditions.

CHOmine (BETA-Version)

August 19, 2016

CHOmine, the InterMine site for CHO and Chinese hamster, went online on August 11, 2016 at https://chomine.boku.ac.at/. CHOmine collects and integrates publicly available Chinese hamster and CHO data, where different datasets are connected to provide user-friendly access. Currently, users are asked to test the site and to provide feedback (impressions, comments, issues, and suggestions for improvements) to Matthias.Gerstl@acib.at or Nicole.Borth@boku.ac.at.

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CHO-March 2012 Example Data

Spots Information

Spot No.
Symbol
Identification
NCBI Protein Accession
CHO Genome Database Link
CHO RefSeq Database Link
Glucosidase 2 subunit beta
blue dot
red dot
78 kDa glucose-regulated protein
blue dot
red dot
Heat shock cognate 71 kDa protein
blue dot
red dot
Clusterin
blue dot
red dot
Tubulin alpha-1A chain
blue dot
red dot
Tubulin beta-7 chain
blue dot
red dot
Calumenin
blue dot
red dot
Eukaryotic initiation factor 4A-I
blue dot
red dot
Actin, cytoplasmic 1
blue dot
red dot
Nuclear migration protein nudC
blue dot
red dot
Nascent polypeptide-associated complex subunit alpha, muscle-specific form
blue dot
red dot
Heme oxygenase 1
blue dot
red dot
Ferritin heavy chain
blue dot
red dot