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CHO-K1 reference map - Quadrant 1 Proteins
News
Updated chromosome-scale CH assembly and CH/CHO-K1 annotations
January 27, 2021
A significantly more continuous version of the Chinese hamster genome, CH PICRH (GCF_003668045.3), along with its 2020 RefSeq annotation is now on CHOgenome.org. Long-range scaffolding of the previous CH genome assembly was performed using high-throughput chromosome conformation capture (Hi-C) and now 97% of the genome is contained in 11 large scaffolds corresponding to the CH chromosomes. In addition, the updated 2020 RefSeq annotation for the CHO-K1 cell line is available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the most recent version of the Chinese hamster genome can be found here.
Updated CH assembly and CH/CHO-K1 annotations
May 1, 2019
We are excited to announce that the significantly improved Chinese hamster genome, CH PICR (GCF_00366804.1), along with its 2018 RefSeq annotation is now online. In addition, an updated RefSeq annotation for the CHO-K1 cell line is now available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the updated Chinese hamster genome can be found here.
New mRNA Expression Browser (Beta)
June 7, 2017
The browser (beta version) for the visualization of mRNA expression from CHO-K1 cells is now online. The data is from several published DNA-microarray or RNA-Seq experiments. The tutorial on how to use this browser can be found here.
CHO-K1 reference map - Quadrant 1 Proteins
| Main Image | Quad 2 | Quad 3 | Quad 4 |
Spots Information
| Symbol | Identification | NCBI Protein Accession |
|---|---|---|
| aco2 | Aconitate Hydratase | gi|13242312 |
| aco2 | Aconitase 2 | gi|18079339 |
| aip1 | Alg-2 Interacting Protein Aip1 | gi|4633515 |
| aldoa | Aldolase A, Fructose-Bisphosphate | gi|6671539 |
| anx1 | Annexin A1 | gi|113942 |
| anx1 | Annexin A1 | gi|1703316 |
| anx2 | Annexin A2 | gi|6996913 |
| arp1 | Actin-Related Protein 1 | gi|5031569 |
| atp5a1 | ATP Synthase | gi|6680748 |
| auf1 | RNA Binding Protein P37 Auf1 | gi|2137113 |
| capg | Capping Protein (Actin Filament), Gelsolin-Like | gi|13097498 |
| cat | Catalase | gi|115704 |
| cct6a | Chaperonin Subunit 6A | gi|6753324 |
| cct7 | Chaperonin Subunit 7 | gi|31982472 |
| chcr2 | Carbonyl Reductase 2 | gi|15147858 |
| cte1 | Cytosolic Acyl Coenzyme A Thioester Hydrolase | gi|6166127 |
| cte1 | Cytosolic Acyl Coenzyme A Thioester Hydrolase | gi|6978431 |
| dbx | RNA Helicase | gi|20373098 |
| dld | Dihydrolipoamide Dehydrogenase | gi|28070943 |
| eef1g | Eukaryotic Translation Elongation Factor 1 | gi|15530265 |
| eef1g | Eukaryotic Translation Elongation Factor 1 | gi|27661344 |
| eef2 | Eukaryotic Translation Elongation Factor 2 | gi|8393296 |
| eef2 | Eukaryotic Translation Elongation Factor 2 | gi|18202285 |
| eftu | Tu Translation Elongation Factor | gi|27806367 |
| gadp | Glyceraldehyde 3-Phosphate Dehydrogenase | gi|120689 |
| gart | Phosphoribosylglycinamide Formyltransferase | gi|6857793 |
| glud | Glutamate Dehydrogenase | gi|6680027 |
| hnrpa2b1 | Heterogeneous Nuclear Ribonucleoprotein A2/B1 Isoform 2 | gi|7949053 |
| hnrpa2b1 | Heterogeneous Nuclear Ribonucleoprotein A2/B1 Isoform 2 | gi|32880197 |
| hnrpab | Heterogeneous Nuclear Ribonucleoprotein A/B | gi|6754222 |
| hnrpd | Heterogeneous Nuclear Ribonucleoprotein D | gi|28518941 |
| hsp40 | Heat Shock Protein 40 | gi|7706495 |
| hsp47 | 47-Kda Heat Shock Protein | gi|303678 |
| idh1 | Isocitrate Dehydrogenase 1 | gi|6754278 |
| impdh2 | Inosine-5'-Monophosphate Dehydrogenase 2 | gi|124426 |
| ivd | Isovaleryl Coenzyme A Dehydrogenase | gi|6981112 |
| khsrp | Kh-Type Splicing Regulatory Protein | gi|25054300 |
| ldha | Lactate Dehydrogenase A | gi|13786849 |
| ldha | Lactate Dehydrogenase A | gi|8393706 |
| lmna | Lamin A | gi|386856 |
| ltb4dh | Leukotriene B4 12-Hydroxydehydrogenase/Dithiolethione-Inducible Gene-1 | gi|13385466 |
| mrps22 | Mitochondrial Ribosomal Protein S22 | gi|13384904 |
| nono | Non-Pou-Domain-Containing, Octamer-Binding Protein | gi|12963531 |
| nup54 | Nucleoporin P54 | gi|26051237 |
| oxct | 3-Oxoacid Coa Transferase | gi|18266680 |
| pa2g4 | P38-2G4 Protein, Proliferation-Associated 2G4 | gi|1083448 |
| pa2g4 | Proliferation-Associated 2G4; Proliferation-Associated Protein 1 | gi|6755100 |
| paimbp | PAI-1 mRNA-Binding Protein | gi|13640523 |
| pcbp1 | Poly(Rc) Binding Protein 1 (Heterogenous Nuclear Ribonucleoprotein E1) | gi|5453854 |
| pgk | Phosphoglycerate Kinase | gi|1730519 |
| phgdh | 3-Phosphoglycerate Dehydrogenase | gi|13928850 |
| pkm2 | Pyruvate Kinase M2 | gi|31416989 |
| ppid | Peptidylprolyl Isomerase D | gi|13385854 |
| pro2455 | Putative GTP-Binding Protein Ptd004 | gi|25453240 |
| prps2 | Phosphoribosylpyrophosphate Synthetase | gi|27664756 |
| prps2 | Phosphoribosylphosphate Synthetase | gi|206428 |
| psmc5 | Protease (Prosome, Macropain) 26S Subunit | gi|7110703 |
| psmc6 | Proteasome Protein P45/Sug / Proteasome 26S Atpase Subunit 6 | gi|11265288 |
| psmc6 | Proteasome Protein P45/Sug / Proteasome 26S Atpase Subunit 6 | gi|24430160 |
| psmc6 | Similar To 26S Protease Regulatory Subunit S10B (Proteasome Subunit P42) | gi|27674591 |
| psmd7 | Proteasome (Prosome, Macropain) 26S Subunit, Non-Atpase, 7 | gi|6754724 |
| rap | Low Density Lipoprotein Receptor-Related Protein Associated Protein 1 | gi|27676142 |
| sept6 | Septin 6 | gi|7512805b |
| sf3b4 | Spliceosome Associated Protein 49 | gi|23346437 |
| shmt2 | Serine Hydroxymethyltransferase | gi|2507389 |
| talh | Transaldolase | gi|16905394 |
| tkt | Transketolase | gi|11066098 |
| txnrd1 | Thioredoxin Reductase | gi|27807129 |
| tyms | Thymidylate Synthase | gi|9507217 |
| uqcrc2 | Rikubiquinol Cytochrome C Reductase Core Protein 2 | gi|22267442 |
| vdac1 | Voltage-Dependent Anion Channel 1 | gi|6755963 |
| vdac1 | Voltage-Dependent Anion Channel 1 | gi|8745552 |