CHOgenome.org
CHO-K1 reference map - Quadrant 2 Proteins
News
Updated chromosome-scale CH assembly and CH/CHO-K1 annotations
January 27, 2021
A significantly more continuous version of the Chinese hamster genome, CH PICRH (GCF_003668045.3), along with its 2020 RefSeq annotation is now on CHOgenome.org. Long-range scaffolding of the previous CH genome assembly was performed using high-throughput chromosome conformation capture (Hi-C) and now 97% of the genome is contained in 11 large scaffolds corresponding to the CH chromosomes. In addition, the updated 2020 RefSeq annotation for the CHO-K1 cell line is available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the most recent version of the Chinese hamster genome can be found here.
Updated CH assembly and CH/CHO-K1 annotations
May 1, 2019
We are excited to announce that the significantly improved Chinese hamster genome, CH PICR (GCF_00366804.1), along with its 2018 RefSeq annotation is now online. In addition, an updated RefSeq annotation for the CHO-K1 cell line is now available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the updated Chinese hamster genome can be found here.
New mRNA Expression Browser (Beta)
June 7, 2017
The browser (beta version) for the visualization of mRNA expression from CHO-K1 cells is now online. The data is from several published DNA-microarray or RNA-Seq experiments. The tutorial on how to use this browser can be found here.
CHO-K1 reference map - Quadrant 2 Proteins
| Main Image | Quad 1 | Quad 3 | Quad 4 |
Spots Information
| Symbol | Identification | NCBI Protein Accession |
|---|---|---|
| act | Actin (Beta Or Gamma) | gi|809561 |
| act | Actin (Beta Or Gamma) | gi|29603621 |
| act | Actin (Beta Or Gamma) | gi|71620 |
| adprh | ADP-Ribosylarginine Hydrolase | gi|399055 |
| arbp | Acidic Ribosomal Protein P0 | gi|12654583 |
| arbp | Acidic Ribosomal Protein P0 | gi|71138 |
| arbp | Acidic Ribosomal Protein P0 | gi|11693176 |
| atp5b | ATP Synthase Beta Subunit | gi|1374715 |
| calu | Calumenin | gi|4502551 |
| capz | F-Actin Capping Protein Alpha-1 | gi|1345694 |
| cope | Coatomer Epsilon Subunit | gi|2492684 |
| crkl | V-Crk Sarcoma Virus Ct10 Oncogene Homolog | gi|14250173 |
| dlst | Dihydrolipoamide S-Succinyltransferase | gi|21313536 |
| ef1d | Similar To Elongation Factor 1-Delta | gi|27662108 |
| eif3j | Similar To Eukaryotic Translation Initiation Factor 3 | gi|27732163 |
| eif3s2 | Eukaryotic Translation Initiation Factor 3 Subunit 2 | gi|9055370 |
| eif3s4 | Eukaryotic Translation Initiation Factor 3 | gi|4503517 |
| eno1 | Enolase 1 | gi|28485920 |
| g3bp | Ras-Gtpase-Activating Protein Sh3-Domain Binding Protein | gi|7305075 |
| g3bp | Ras-Gtpase-Activating Protein Sh3-Domain Binding Protein | gi|5031703 |
| grp96/94 | Tumor Rejection Antigen Gp96 | gi|6755863 |
| hnrpc | Heterogeneous Nuclear Ribonucleoprotein C | gi|4758544 |
| hnrpf | Heterogeneous Nuclear Ribonucleoprotein F | gi|4826760 |
| hnrph1 | Heterogeneous Nuclear Ribonucleoprotein H1 | gi|5031753 |
| hnrpk | Heterogeneous Nuclear Ribonucleoprotein K | gi|12230546 |
| hsp60 | 60 Kda Heat Shock Protein | gi|129378 |
| hsp70 | Stress-70 Protein | gi|3122170 |
| hsp70 | Heat Shock 70 kD protein 5 | gi|121570 |
| hspa8 | Heat Shock 70kDa protein 8 | gi|5729877 |
| idh3a | Isocitrate Dehydrogenase Subunit Alpha | gi|1182011 |
| lgals3 | Laminin-Binding Protein (Ribosomal Protein Rs.40K) | gi|34234 |
| lgals3 | Galectin-3 | gi|1346428 |
| mdh1 | Cytosolic Malate Dehydrogenase | gi|5174539 |
| naca | Nascent Polypeptide-Associated Complex Alpha | gi|20867687 |
| npm1 | Nucleolar Phosphoprotein B23 | gi|20858353 |
| nudc | Nuclear Distribution Gene C | gi|8394272 |
| orp150 | 150 Kda Oxygen-Regulated Protein Precursor | gi|10720182 |
| orp150 | 150 Kda Oxygen-Regulated Protein Precursor | gi|20302024 |
| pcna | Proliferating Cell Nuclear Antigen | gi|13124447 |
| pdi | Protein Disulfide-Isomerase | gi|19880309 |
| pdia3 | Protein Disulfide-Isomerase A3 | gi|16508150 |
| psmc4 | Proteasome 26S Atpase Subunit 4 | gi|25742677 |
| psmd14 | 26S Proteasome-Associated Pad1 Homolog | gi|5031981 |
| rcn3 | Reticulocalbin 3 | gi|28626510 |
| suclg2 | Succinate-Coenzyme A Ligase | gi|28175163 |
| trap1 | Tumor Necrosis Factor Type 1 Receptor Associated Protein | gi|3273383 |
| tubb5 | Tubulin, Beta 5 | gi|7106439 |
| txnl2 | Thioredoxin-Like 2 | gi|31981269 |
| uba | Ubiquilin 1 | gi|16753205 |
| uk33 | Uba/Ubx 33.3 Kda Protein | gi|22122591 |