CHOgenome.org
CHO-K1 reference map - Quadrant 4 Proteins
News
Updated chromosome-scale CH assembly and CH/CHO-K1 annotations
January 27, 2021
A significantly more continuous version of the Chinese hamster genome, CH PICRH (GCF_003668045.3), along with its 2020 RefSeq annotation is now on CHOgenome.org. Long-range scaffolding of the previous CH genome assembly was performed using high-throughput chromosome conformation capture (Hi-C) and now 97% of the genome is contained in 11 large scaffolds corresponding to the CH chromosomes. In addition, the updated 2020 RefSeq annotation for the CHO-K1 cell line is available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the most recent version of the Chinese hamster genome can be found here.
Updated CH assembly and CH/CHO-K1 annotations
May 1, 2019
We are excited to announce that the significantly improved Chinese hamster genome, CH PICR (GCF_00366804.1), along with its 2018 RefSeq annotation is now online. In addition, an updated RefSeq annotation for the CHO-K1 cell line is now available. Both can be searched (gene search and BLAST) and viewed on JBrowse. More information on the updated Chinese hamster genome can be found here.
New mRNA Expression Browser (Beta)
June 7, 2017
The browser (beta version) for the visualization of mRNA expression from CHO-K1 cells is now online. The data is from several published DNA-microarray or RNA-Seq experiments. The tutorial on how to use this browser can be found here.
CHO-K1 reference map - Quadrant 4 Proteins
| Main Image | Quad 1 | Quad 2 | Quad 3 |
Spots Information
| Symbol | Identification | NCBI Protein Accession |
|---|---|---|
| arl3 | ADP-Ribosylation-Like 3; Adp-Ribosylation Factor-Like Protein 3 | gi|9789881 |
| atp6e1 | Atpase, H+ Transporting, Lysosomal 31Kda, V1 Subunit E Isoform 1 | gi|27807375 |
| blvrb | Biliverdin Reductase B | gi|21450325 |
| btf3 | Basic Transcription Factor 3 | gi|20070130 |
| cfl1 | Cofilin 1, Non-Muscle | gi|8393101 |
| cpsf5 | Cleavage And Polyadenylation Specific Factor 5 | gi|5901926 |
| dhfr | Dihydrofolate Reductase | gi|1352324 |
| dstn | Destrin | gi|27704086 |
| echs1 | Enoyl-Coa Hydratase (Chain A) | gi|20149805 |
| eef1e1 | Multisynthetase Complex Auxiliary Component P18 | gi|18202336 |
| gnb2l1 | Guanine Nucleotide Binding Protein | gi|5174447 |
| gstp1 | Glutathione S-Transferase P | gi|1170100 |
| gstp2 | Glutathione S-Transferase P | gi|25453412 |
| hadhsc | L-3-Hydroxyacyl-Coenzyme A Dehydrogenase | gi|17105336 |
| hprta | Hypoxanthine Phosphoribosyltransferase | gi|631625 |
| hprta | Hypoxanthine Phosphoribosyltransferase | gi|7305155 |
| hsp27 | Heat Shock 27 kDa Protein | gi|123569 |
| mak3 | Adenylate Kinase Isozyme 3 | gi|4760600 |
| mtap | Methylthioadenosine Phosphorylase | gi|17391372 |
| nme2 | Nucleoside Diphosphate Kinase B; Expressed In Non-Metastatic Cells 2 | gi|4505409 |
| nme2 | Nucleoside Diphosphate Kinase | gi|13929192 |
| park7 | Rna-Binding Protein Regulatory Subunit; Oncogene Dj1 | gi|31543380 |
| pbp | Phosphatidylethanolamine Binding Protein | gi|8393910 |
| pgam1 | Phosphoglycerate Mutase 1 | gi|8248819 |
| pgm1 | Phosphoglycerate Mutase Type B | gi|8248819 |
| pnp | Purine Nucleoside Phosphorylase | gi|387033 |
| ppia | Peptidyl-Prolyl Cis-Trans Isomerase A | gi|118098 |
| ppia | Peptidyl-Prolyl Cis-Trans Isomerase A | gi|13937981 |
| ppia | Peptidyl-Prolyl Cis-Trans Isomerase A | gi|27685005 |
| ppia | Peptidyl-Prolyl Cis-Trans Isomerase A | gi|118098 |
| ppia | Peptidyl-Prolyl Cis-Trans Isomerase | gi|23396584 |
| prdx1 | Thioredoxin Peroxidase Ii | gi|6942233 |
| prdx4 | Peroxiredoxin 4 | gi|16758274 |
| prdx6 | Peroxiredoxin 6 | gi|16758348 |
| psma2 | Proteasome Alpha 2 Subunit; Proteasome Subunit Hc3 | gi|4506181 |
| psma4 | Proteasome (Prosome, Macropain) Subunit, Alpha Type 4 | gi|6755196 |
| psma6 | Proteasome (Prosome, Macropain) Subunit, Alpha Type 6 | gi|6755198 |
| psma7 | Proteasome (Prosome, Macropain) Subunit, Alpha Type 7 | gi|7106389 |
| psme1 | Protease (Prosome, Macropain) 28 Subunit, Alpha | gi|8394088 |
| psme1 | Proteasome (Prosome, Macropain) Subunit, Alpha | gi|8394060 |
| ran | Ran Protein | gi|32425497 |
| ran | Ran Binding Protein 1 | gi|32425497 |
| rbm3 | Rna Binding Motif Protein 3 | gi|7949121 |
| rbm3 | Rna-Binding Motif Protein 3 | gi|13785947 |
| rps12 | Ribosomal Protein S12 | gi|27485488 |
| sdf2l1 | Stromal Cell-Derived Factor 2-Like 1 | gi|11612505 |
| sip | Calcyclin Binding Protein | gi|7656952 |
| snx3 | Sorting Nexin 3 | gi|10720280 |
| sod2 | Superoxide Dismutase 2 | gi|17390379 |
| tagln2 | Transgelin 2 | gi|12803567 |
| tpi1 | Triosephosphate Isomerase 1 | gi|136066 |
| ubch7 | Ubiquitin-Protein Ligase / Ubiquitin-Conjugating Enzyme E2-18 Kda | gi|25051769 |
| ubch7 | Ubiquitin-Protein Ligase / Ubiquitin-Conjugating Enzyme E2-18 Kda | gi|27665054 |
| vdac1 | Voltage-Dependent Anion Channel 1 | gi|6755963 |
| vdac1 | Voltage-Dependent Anion Channel 1 | gi|8745552 |
| vdac2 | Voltage-Dependent Anion Channel 2 | gi|6093769 |
| wbscr1 | Eukaryotic Translation Initiation Factor 4H | gi|14702180 |